seqPB-ALIGNm

June 27th, 2015

Very fast and efficient structure comparison and mining using protein blocks

seqPB-ALIGNm

seqPB-ALIGNm is a structure mining tool. It compares a query PB sequence with all structural domains in SCOP and finds structures that have similar fold to the query. It then performs local (Smith Waterman) or global (Needleman-Wunsch) alignment with every structural domains available in SCOP 1.75. SCOP domains that share local or global structural similarities with the query are extracted PB-ALIGNc. seqPB-ALIGNm is fast and takes about 1 min to search for database.

seqPB-ALIGNm (PB sequence against database )

Paste your PB sequence here    

Select SCOP class

Length (in %)

Ranks [input number of top alignments in results you would like to see

Local alignment

Global alignment

To obtain the results of already done query, input the assigned JOBID :

PB-ALIGN group

Swapnil Mahajan, Manoj Tyagi, Priyanka Sharma, Frédéric Cadet, N. Srinivasan, Alexandre G. de Brevern & Bernard Offmann
Site maintained by :S. Mahajan, P. Sharma, M. Tyagi and B. Offmann
Last updated on Saturday, June 27, 2015
Comments are closed.