{"id":38,"date":"2012-02-11T15:22:29","date_gmt":"2012-02-11T15:22:29","guid":{"rendered":"http:\/\/.\/?page_id=38"},"modified":"2023-04-27T08:33:22","modified_gmt":"2023-04-27T08:33:22","slug":"advanced-search","status":"publish","type":"page","link":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/?page_id=38","title":{"rendered":"Advanced Search"},"content":{"rendered":"<div class=\"post-meta\">Last update on Thursday, April 27, 2023<\/div><table>\n<tr>\n<td width=\"50%\">\n<p align=\"justify\" >You can access to the tables called <em>mappingFULLPDB<\/em> or <em>mapping100<\/em>, <em>mapping95<\/em>, <em>mapping90<\/em>, <em>mapping70<\/em>, <em>mapping40<\/em>, <em>mapping30<\/em> for respective SCOP sequence identity cutoff of 100%, 95%, 90%, 70%, 40% and 30%. You can also access a table named <em>rmsdaFULLPDB<\/em><em>rmsda100<\/em> for C-alpha and backbone temperature factors.<br \/>\nHere is the description of the <em>mappingFULLPDB<\/em> or <em>mapping100<\/em> table in the database :<br \/>\n<a href=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/table_desc.jpg?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/table_desc.jpg?resize=480%2C320&#038;ssl=1\" alt=\"table_desc\" width=\"480\" height=\"320\" class=\"aligncenter size-medium wp-image-616\" \/><\/a><br \/>\nHere is the description of the <em>rmsdaFULLPDB<\/em> or <em>rmsda100<\/em> table in the database :<br \/>\n<a href=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/table_desc21.jpg?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/table_desc21.jpg?resize=480%2C320&#038;ssl=1\" alt=\"table_desc2\" width=\"480\" height=\"320\" class=\"aligncenter size-large wp-image-627\" \/><\/a>\n<\/p>\n<\/td>\n<td width=\"50%\">\n<h4>Your request<\/h4>\n<p>Use the inputbox below to write your own MySQL requests for searching in <a href=\".\/?page_id=4\">PB-PENTAdb<\/a> database.<\/p>\n<form action=\"\/cgi-bin\/penta175\/advanced_search_ask.cgi\" method=\"post\"><textarea style=\"font-family: courier;\" cols=\"40\" rows=\"10\" name=\"sql_request\">select * from mappingFULLPDB where aaseq like &quot;AAVAA&quot;<\/textarea><br \/>\n<strong>(<em>Do not put a semicolon (;) at the end of your command<\/em>)<\/strong><br \/>\n<input type=\"submit\" value=\"Submit SQL Query\" \/><br \/>\n<\/form>\n<p><!--\n[here]\n\n\n\n<h3>Advanced search<\/h3>\n\n\n\n\n<form action=\"\/cgi-bin\/penta175\/advanced_search.cgi\" method=\"post\">\n\n\n<table>\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Pentapeptide Sequence<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Enter one-letter standard amino acid codes. You can use underscore (_) symbol for any amino acid.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" maxlength=\"5\" name=\"pentapep\">AAV_A<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Choose dataset identity cutoff<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><select name=\"map\"><option value=\"FULLPDB\">FULL PDB<\/option><option value=\"100\">SCOP 1.75a 100%<\/option><option value=\"95\">SCOP 1.75a 95%<\/option><option value=\"90\">SCOP 1.75a 90%<\/option><option value=\"70\">SCOP 1.75a 70%<\/option><option value=\"40\">SCOP 1.75a 40%<\/option><option value=\"30\">SCOP 1.75a 30%<\/option><\/select><input type=\"submit\" value=\"submit\"><\/select><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Protein Block(PB)<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><select name=\"pb\"><option value=\"_\">_<\/option><option value=\"a\">a<\/option><option value=\"b\">b<\/option><option value=\"c\">c<\/option><option value=\"d\">d<\/option><option value=\"e\">e<\/option><option value=\"f\">f<\/option><option value=\"g\">g<\/option><option value=\"h\">h<\/option><option value=\"i\">i<\/option><option value=\"j\">j<\/option><option value=\"k\">k<\/option><option value=\"l\">l<\/option><option value=\"m\">m<\/option><option value=\"n\">n<\/option><option value=\"o\">o<\/option><option value=\"p\">p<\/option><\/select><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Secondary Structure<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Enter a string of length 5 with characters H (helix), E (beta strand), C (coil), G (3-10 helix), I (pi helix), T (hydrogen bonded turn) and S (bend). You can use underscore (_) symbol for any secondary structure.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" maxlength=\"5\" name=\"sec_str\">HHH__<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Structural Variability Index (SVI)<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border: 0;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"svi_sign\"><option value=\"ge\"> &#62; &#61; <\/option><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Enter values between 0 and 1. SVI value of 0 indicates structurally non-variable pentapeptide and SVI value of 1 indicates structurally variable pentapeptide. \"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"svi_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>RMSDa<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border: 0;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"rmsda_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Angular RMSD between standard set of dihedral angles of PBs and pentapeptide's dihedral angles.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"rmsda_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Relative Surface Accessibility 1<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"rsa1_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Relative Surface Accessibility of first residue in pentapeptide. Relative Surface Accessibility ranges from 0 to 100.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"rsa1_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Relative Surface Accessibility 2<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"rsa2_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Relative Surface Accessibility of second residue in pentapeptide. Relative Surface Accessibility ranges from 0 to 100.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"rsa2_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Relative Surface Accessibility 3<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"rsa3_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Relative Surface Accessibility of third residue in pentapeptide. Relative Surface Accessibility ranges from 0 to 100.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"rsa3_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Relative Surface Accessibility 4<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"rsa4_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Relative Surface Accessibility of fourth residue in pentapeptide. Relative Surface Accessibility ranges from 0 to 100.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"rsa4_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Relative Surface Accessibility 5<\/strong><\/td>\n\n\n\n\n<td class=\"column1\" style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"rsa5_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Relative Surface Accessibility of fifth residue in pentapeptide. Relative Surface Accessibility ranges from 0 to 100.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"rsa5_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Backbone B factor 1<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"bfac1_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Backbone B-factor of first residue in pentapeptide.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"bfac1_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Backbone B factor 2<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"bfac2_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Backbone B-factor of second residue in pentapeptide.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"bfac2_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Backbone B factor 3<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"bfac3_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Backbone B-factor of third residue in pentapeptide.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"bfac3_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Backbone B factor 4<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"bfac4_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Backbone B-factor of fourth residue in pentapeptide.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"bfac4_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><strong>Backbone B factor 5<\/strong><\/td>\n\n\n\n\n<td style=\"text-align: center;\">\n\n\n<table style=\"width: 100%; border-width: 0px;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td style=\"text-align: center;\"><select name=\"bfac5_sign\"><option value=\"gt\"> &#62; <\/option><option value=\"lt\"> &#60; <\/option><option value=\"eq\"> &#61; <\/option><option value=\"ge\"> &#62; &#61; <\/option><option value=\"le\"> &#60; &#61; <\/option><\/select><\/td>\n\n\n\n\n<td style=\"text-align: center;\"><span title=\"Backbone B-factor of fifth residue in pentapeptide.\"><textarea style=\"font-family: courier;\" cols=\"6\" rows=\"1\" name=\"bfac5_val\">0.00<\/textarea><\/span><\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<\/td>\n\n\n<\/tr>\n\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<br \/>\n\n\n<h2>Select the fields that you want in the output:<\/h2>\n\n\n\n\n\n<table style=\"width: 100%;\">\n\n\n<tbody>\n\n\n<tr>\n\n\n<td>\n<input type=\"checkbox\" name=\"id_protein\" value=\"id_protein\"  checked\/> Domain ID<\/td>\n\n\n\n\n<td>\n<input type=\"checkbox\" name=\"pos\" value=\"pos\"  checked\/> Position<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td>\n<input type=\"checkbox\" name=\"pb_result\" value=\"pb\" checked \/> Protein Block<\/td>\n\n\n\n\n<td>\n<input type=\"checkbox\" name=\"sec_str_result\" value=\"sec_str\"  checked\/> Secondary Structure<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td>\n<input type=\"checkbox\" name=\"dihedral\" value=\"dihedral\"  checked\/> Dihedral angles<\/td>\n\n\n\n\n<td>\n<input type=\"checkbox\" name=\"aaseq\" value=\"aaseq\"  checked\/> Pentapeptide sequence<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td>\n<input type=\"checkbox\" name=\"rsa\" value=\"rsa\"  checked\/> RSA<\/td>\n\n\n\n\n<td>\n<input type=\"checkbox\" name=\"svi\" value=\"svi\" checked\/> SVI<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td>\n<input type=\"checkbox\" name=\"rmsda_result\" value=\"rmsda\"  checked\/> RMSDa<\/td>\n\n\n\n\n<td>\n<input type=\"checkbox\" name=\"Bkbone_Bfac\" value=\"Bkbone_Bfac\"  checked\/> Backbone B facotrs<\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n<br \/>\n<center><input type=\"submit\" value=\"Submit\" \/><\/center>\n\n<\/form>\n\n\n-->\n<\/td>\n<\/tr>\n<\/table>\n<p><!--\n\n\n<table>\n\n\n<tr>\n\n<td>Field     <\/td>\n\n\n\n<td>Type        <\/td>\n\n\n\n<td>Null<\/td>\n\n\n\n<td>Key<\/td>\n\n\n\n<td>Default<\/td>\n\n\n\n<td>Extra <\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>id_protein<\/td>\n\n\n\n<td>varchar(20) <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>MUL<\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>pb        <\/td>\n\n\n\n<td>varchar(4)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>aaseq     <\/td>\n\n\n\n<td>varchar(5)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>MUL<\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>pos       <\/td>\n\n\n\n<td>int(5)      <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>psi1      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>phi2      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>psi2      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>phi3      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>psi3      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>phi4      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>psi4      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>phi5      <\/td>\n\n\n\n<td>float(6,1)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>rmsda     <\/td>\n\n\n\n<td>decimal(6,3)<\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>sec_str   <\/td>\n\n\n\n<td>varchar(5)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>rsa1      <\/td>\n\n\n\n<td>float(5,2)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>rsa2      <\/td>\n\n\n\n<td>float(5,2)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>rsa3      <\/td>\n\n\n\n<td>float(5,2)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>rsa4      <\/td>\n\n\n\n<td>float(5,2)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n\n\n<tr>\n\n<td>rsa5      <\/td>\n\n\n\n<td>float(5,2)  <\/td>\n\n\n\n<td>YES <\/td>\n\n\n\n<td>   <\/td>\n\n\n\n<td>NULL   <\/td>\n\n\n\n<td><\/td>\n\n<\/tr>\n\n\n<\/table>\n\n\n\n\n<table>\n\n\n<tbody>\n\n\n<tr>\n\n\n<td><strong>Field<\/strong><\/td>\n\n\n\n\n<td><strong>id_protein<\/strong><\/td>\n\n\n\n\n<td><strong>pb<\/strong><\/td>\n\n\n\n\n<td><strong>aaseq<\/strong><\/td>\n\n\n\n\n<td><strong>pos<\/strong><\/td>\n\n\n\n\n<td><strong>psi1<\/strong><\/td>\n\n\n\n\n<td><strong>phi2<\/strong><\/td>\n\n\n\n\n<td><strong>psi2<\/strong><\/td>\n\n\n\n\n<td><strong>phi3<\/strong><\/td>\n\n\n\n\n<td><strong>psi3<\/strong><\/td>\n\n\n\n\n<td><strong>phi4<\/strong><\/td>\n\n\n\n\n<td><strong>psi4<\/strong><\/td>\n\n\n\n\n<td><strong>phi5<\/strong><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Type<\/strong><\/td>\n\n\n\n\n<td>varchar(20)<\/td>\n\n\n\n\n<td>varchar(4)<\/td>\n\n\n\n\n<td>varchar(9)<\/td>\n\n\n\n\n<td>int(11)<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>int(11)<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Field<\/strong><\/td>\n\n\n\n\n<td><strong>rmsda<\/strong><\/td>\n\n\n\n\n<td><strong>sec_str<\/strong><\/td>\n\n\n\n\n<td><strong>rsa1<\/strong><\/td>\n\n\n\n\n<td><strong>rsa2<\/strong><\/td>\n\n\n\n\n<td><strong>rsa3<\/strong><\/td>\n\n\n\n\n<td><strong>rsa4<\/strong><\/td>\n\n\n\n\n<td><strong>rsa5<\/strong><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Type<\/strong><\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>varchar(5)<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\nDescription of the <em>rmsda100<\/em> table in our database :\n\n\n<table>\n\n\n<tbody>\n\n\n<tr>\n\n\n<td><strong>Field<\/strong><\/td>\n\n\n\n\n<td><strong>id_protein<\/strong><\/td>\n\n\n\n\n<td><strong>pb<\/strong><\/td>\n\n\n\n\n<td><strong>aaseq<\/strong><\/td>\n\n\n\n\n<td><strong>pos<\/strong><\/td>\n\n\n\n\n<td><strong>CA_Bfac1<\/strong><\/td>\n\n\n\n\n<td><strong>CA_Bfac2<\/strong><\/td>\n\n\n\n\n<td><strong>CA_Bfac3<\/strong><\/td>\n\n\n\n\n<td><strong>CA_Bfac4<\/strong><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Type<\/strong><\/td>\n\n\n\n\n<td>varchar(20)<\/td>\n\n\n\n\n<td>varchar(4)<\/td>\n\n\n\n\n<td>varchar(9)<\/td>\n\n\n\n\n<td>int(11)<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Field<\/strong><\/td>\n\n\n\n\n<td><strong>CA_Bfac5<\/strong><\/td>\n\n\n\n\n<td><strong>Bkbone_Bfac1<\/strong><\/td>\n\n\n\n\n<td><strong>Bkbone_Bfac2<\/strong><\/td>\n\n\n\n\n<td><strong>Bkbone_Bfac3<\/strong><\/td>\n\n\n\n\n<td><strong>Bkbone_Bfac4<\/strong><\/td>\n\n\n\n\n<td><strong>Bkbone_Bfac5<\/strong><\/td>\n\n\n\n\n<td><strong>pb1<\/strong><\/td>\n\n\n\n\n<td><strong>rmsda1<\/strong><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Type<\/strong><\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n\n\n<td>varchar(4)<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Field<\/strong><\/td>\n\n\n\n\n<td><strong>pb2<\/strong><\/td>\n\n\n\n\n<td><strong>rmsda2<\/strong><\/td>\n\n\n<\/tr>\n\n\n\n\n<tr>\n\n\n<td><strong>Type<\/strong><\/td>\n\n\n\n\n<td>varchar(4)<\/td>\n\n\n\n\n<td>float<\/td>\n\n\n<\/tr>\n\n\n<\/tbody>\n\n\n<\/table>\n\n\n--><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Last update on Thursday, April 27, 2023 You can access to the tables called mappingFULLPDB or mapping100, mapping95, mapping90, mapping70, mapping40, mapping30 for respective SCOP sequence identity cutoff of 100%, 95%, 90%, 70%, 40% and 30%. 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