{"id":281,"date":"2012-04-20T15:19:39","date_gmt":"2012-04-20T15:19:39","guid":{"rendered":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/?page_id=281"},"modified":"2015-06-03T00:16:11","modified_gmt":"2015-06-03T00:16:11","slug":"other","status":"publish","type":"page","link":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/?page_id=281","title":{"rendered":"Other"},"content":{"rendered":"<div class=\"post-meta\">Last update on Wednesday, June 3, 2015<\/div><h2>Other resources about pentapeptides<\/h2>\n<ul>\n<li><a href=\"http:\/\/www.ebi.ac.uk\/interpro\/entry\/IPR001646\" target=\"_blank\">INTERPRO &#8211; IPR001646 Pentapeptide repeat<\/a><\/li>\n<li><a href=\"http:\/\/pfam.sanger.ac.uk\/clan\/CL0505\">PFAM &#8211; CL0505 Pentapeptide clan<\/a>\n<ul>\n<li><a href=\"http:\/\/pfam.sanger.ac.uk\/family\/PF00805\">PFAM &#8211; PF00805 Pentapeptide repeats family<\/a><\/li>\n<li><a href=\"http:\/\/pfam.sanger.ac.uk\/family\/PF13576\">PFAM &#8211; PF13576 Pentapeptide repeats 3 family<\/a><\/li>\n<li><a href=\"http:\/\/pfam.sanger.ac.uk\/family\/PF13599\">PFAM &#8211; PF13599 Pentapeptide repeats 4 family<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/systers.molgen.mpg.de\/cgi-bin\/nph-fetchcluster.pl?PFAM=Pentapeptide\">SYSTERS &#8211; Protein families with Pfam domain pentapeptide (link not active)<\/a><\/li>\n<li><a href=\"http:\/\/scop.mrc-lmb.cam.ac.uk\/scop\/data\/scop.b.c.bdg.i.A.html\">SCOP &#8211; Pentapeptide repeat-like superfamily<\/a><\/li>\n<li><a href=\"http:\/\/www.ncl-india.org\/trips\/poly\/PENTA.HTM\">Penta-peptide Repeats (link not active)<\/a><\/li>\n<\/ul>\n<h2>Selected readings<\/h2>\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/6422466\">1984 &#8211; On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations.<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/3681998\">1987 &#8211; Analysis of sequence-similar pentapeptides in unrelated protein tertiary structures. Strategies for protein folding and a guide for site-directed mutagenesis.<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/8298461\">1993 &#8211; Origins of structural diversity within sequentially identical hexapeptides<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9517538\">1998 &#8211; Structural diversity of sequentially identical subsequences of proteins: identical octapeptides can have different conformations<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/9655353\">1998 &#8211; Structure and distribution of pentapeptide repeats in bacteria<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/10556020\" target=\"_blank\">1999 &#8211; Secondary structure of proteins and three-dimensional pattern recognition<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11025540\">2000 &#8211; Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12676978\" target=\"_blank\">2003 &#8211; A pentapeptide-based method for protein secondary structure prediction<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15828008\">2005 &#8211; Computation of conformational entropy from protein sequences using the machine-learning method&#8211;application to the study of the relationship between structural conservation and local structural stability<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15689510\" target=\"_blank\">2005 &#8211; Availability of short amino acid sequences in proteins<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17565494\">2007 &#8211; A reduced amino acid alphabet for understanding and designing protein adaptation to mutation<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21731588\">2010 &#8211; A short survey on protein blocks<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21058639\">2010 &#8211; Helix formation in a pentapeptide: experiment and force-field dependent dynamics.<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21287616\">2011 &#8211; Predicting protein flexibility through the prediction of local structures<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21684149\">2011 &#8211; Protein design with fragment databases<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Last update on Wednesday, June 3, 2015Other resources about pentapeptides INTERPRO &#8211; IPR001646 Pentapeptide repeat PFAM &#8211; CL0505 Pentapeptide clan PFAM &#8211; PF00805 Pentapeptide repeats family PFAM &#8211; PF13576 Pentapeptide repeats 3 family PFAM &#8211; PF13599 Pentapeptide repeats 4 family &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"more-link\" href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/?page_id=281\"> <span class=\"screen-reader-text\">Other<\/span> Read More &raquo;<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":8,"comment_status":"closed","ping_status":"open","template":"full-width-page.php","meta":{"footnotes":""},"class_list":["post-281","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=\/wp\/v2\/pages\/281","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=281"}],"version-history":[{"count":37,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=\/wp\/v2\/pages\/281\/revisions"}],"predecessor-version":[{"id":726,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=\/wp\/v2\/pages\/281\/revisions\/726"}],"wp:attachment":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=281"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}