{"id":206,"date":"2015-11-10T14:31:10","date_gmt":"2015-11-10T14:31:10","guid":{"rendered":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/?page_id=206"},"modified":"2023-04-17T12:36:58","modified_gmt":"2023-04-17T12:36:58","slug":"extractor","status":"publish","type":"page","link":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/?page_id=206","title":{"rendered":"PB-Extractor"},"content":{"rendered":"<table border=\"1\" width=\"100%\" style=\"margin: 0px;\">\n<tr>\n<td>\n<\/p>\n<h3>Tips :<\/h3>\n<p><\/p>\n<p>This tools use regular expression from Perl. <a href=\"https:\/\/www.cs.tut.fi\/~jkorpela\/perl\/regexp.html\" target=\"_blank\" rel=\"noopener\">Here<\/a> a list of all the command you can submit.<br \/>\nYou can also filtered the PDB at some sequence identity cutoffs.<\/p>\n<p><b>Provide your pattern(s) in the following field :<\/b><\/p>\n<form action=\"\/cgi-bin\/PBE\/PB_pattern_search.cgi\" method=\"post\">\n<textarea cols=\"120\" rows=\"10\" name=\"patterns\" style=\"font-family:courier\">MMMMMMMMMM[ABCEFGHIJKLNOP]{6}DDDDDDDD<\/textarea><\/p>\n<p>Filters : <select name=\"filter\"><option value=\"All\">All<\/option><option value=\"100\">FULL PDB 100%<\/option><option value=\"95\">FULL PDB 95%<\/option><option value=\"90\">FULL PDB 90%<\/option><option value=\"70\">FULL PDB 70%<\/option><option value=\"50\">FULL PDB 50%<\/option><option value=\"40\">FULL PDB 40%<\/option><option value=\"30\">FULL PDB 30%<\/option><\/select><br \/>\n<input type=\"submit\" value=\"Submit\" \/><br \/>\n<\/form>\n<p>\n<\/td>\n<\/tr>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>Tips : This tools use regular expression from Perl. Here a list of all the command you can submit. You can also filtered the PDB at some sequence identity cutoffs. Provide your pattern(s) in the following field : MMMMMMMMMM[ABCEFGHIJKLNOP]{6}DDDDDDDD Filters : AllFULL PDB 100%FULL PDB 95%FULL PDB 90%FULL PDB 70%FULL PDB 50%FULL PDB 40%FULL PDB [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":182,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-without-sidebar.php","meta":{"footnotes":""},"class_list":["post-206","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/pages\/206","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=206"}],"version-history":[{"count":3,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/pages\/206\/revisions"}],"predecessor-version":[{"id":244,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/pages\/206\/revisions\/244"}],"up":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=\/wp\/v2\/pages\/182"}],"wp:attachment":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/pbe\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=206"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}