{"id":11,"date":"2016-02-16T16:23:00","date_gmt":"2016-02-16T16:23:00","guid":{"rendered":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/?page_id=11"},"modified":"2023-05-02T14:16:55","modified_gmt":"2023-05-02T14:16:55","slug":"acknowledgements","status":"publish","type":"page","link":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/?page_id=11","title":{"rendered":"Acknowledgements"},"content":{"rendered":"<div class=\"post-meta\">Last updated onTuesday, May 2, 2023<\/div><h3>Team<\/h3>\n<p>PB-PENTAPEPT was developed and is maintained by an international team lead by Bernard Offmann (University of Nantes).<\/p>\n<h4>Active members<\/h4>\n<ul>\n<li>Nantes Universit\u00e9 (US2B, Nantes, France): <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=HOFFMANN+Lionel+%5Bau%5D\" target=\"_blank\" rel=\"noopener\">Lionel Hoffmann<\/a>, <a href=\"https:\/\/scholar.google.fr\/scholar?start=0&amp;q=Yves-Henri+Sanejouand&amp;hl=en&amp;as_sdt=1,5&amp;as_vis=1\" target=\"_blank\" rel=\"noopener\">Yves-Henri Sanejouand<\/a>, <a href=\"https:\/\/scholar.google.com\/citations?user=KtCBCsYAAAAJ&amp;hl=fr\" target=\"_blank\" rel=\"noopener\">Bernard Offmann<\/a>, <a href=\"https:\/\/fr.linkedin.com\/in\/timoth%C3%A9e-salzat-088bba209\" target=\"_blank\" rel=\"noopener\">Timoth\u00e9e Salzat-Hervouette<\/a><\/li>\n<li>INSERM and Universit\u00e9 Denis Diderot (DSIMB team, Paris, France): <a href=\"http:\/\/www.dsimb.inserm.fr\/~debrevern\/index.php\" target=\"_blank\" rel=\"noopener\">Alexandre G. de Brevern<\/a><\/li>\n<li>INSERM and Universit\u00e9 de La R\u00e9union (DSIMB team, Saint-Denis, France): <a href=\"https:\/\/scholar.google.fr\/scholar?start=0&amp;q=author:%22Fr\u00e9d\u00e9ric+CADET%22&amp;hl=en&amp;as_sdt=0,5\" target=\"_blank\" rel=\"noopener\">Fr\u00e9d\u00e9ric Cadet<\/a> (Saint-Denis, France)<\/li>\n<li>Indian Institute of Science (Bangalore, India): <a href=\"https:\/\/scholar.google.fr\/citations?user=dxiu7GQAAAAJ&amp;hl=en\" target=\"_blank\" rel=\"noopener\">N. Srinivasan<\/a><\/li>\n<\/ul>\n<h4>Past members<\/h4>\n<ul>\n<li>Iyanar Vetrivel (India), <a href=\"https:\/\/scholar.google.fr\/citations?user=LGtV-WIAAAAJ&amp;hl=en\" target=\"_blank\" rel=\"noopener\">Swapnil Mahajan<\/a> (India), Tristan Rialland (France), <a href=\"https:\/\/scholar.google.fr\/citations?user=A-p9uukAAAAJ&amp;hl=en\" target=\"_blank\" rel=\"noopener\">Manoj Tyagi<\/a> (USA), Priyanka Sharma (USA), Murielle Grondin (Saint-Denis, France), Matthieu Drula (Saint-Denis, France), Aurore Va\u00eftinadapoull\u00e9 (Paris, France), Etienne Frumence (Saint-Denis, France), Thomas Coudoux (Nantes, France)<\/li>\n<\/ul>\n<p><!-- The team behind Pentapept is composed of the following :\n\n\n<ul>\n \t\n\n<li>Bernard Offmann - Universit\u00e9 de Nantes formerly at Universit\u00e9 de La R\u00e9union (France)<\/li>\n\n\n \t\n\n<li>Fr\u00e9d\u00e9ric Cadet - Universit\u00e9 de La R\u00e9union (France)<\/li>\n\n\n \t\n\n<li>Alexandre G. de Brevern - INSERM and INTS (France)<\/li>\n\n\n \t\n\n<li>N. Srinivasan - Indian Institute of Science (India)<\/li>\n\n\n \t\n\n<li>Swapnil Mahajan - Universit\u00e9 de La R\u00e9union and Universit\u00e9 de Nantes (France) formely at Indian Institute of Science (India)<\/li>\n\n\n \t\n\n<li>Manoj Tyagi - NIH (USA) formely at Universit\u00e9 de La R\u00e9union (France)<\/li>\n\n\n \t\n\n<li>Priyanka Sharma - Formerly at Universit\u00e9 de La R\u00e9union<\/li>\n\n\n \t\n\n<li>Matthieu Drula - Universit\u00e9 de La R\u00e9union (France)<\/li>\n\n\n \t\n\n<li>Muriel Grondin - Universit\u00e9 de La R\u00e9union (France)<\/li>\n\n\n<\/ul>\n\n\n--><\/p>\n<h3>Financial support<\/h3>\n<ul>\n<li>Conseil R\u00e9gional de La R\u00e9union: Phd grants to Manoj Tyagi, Swapnil Mahajan and Iyanar Vetrivel<\/li>\n<li>Conseil R\u00e9gional Pays de La Loire for <a href=\"http:\/\/griote.univ-nantes.fr\/\" target=\"_blank\" rel=\"noopener\">GRIOTE Project<\/a><\/li>\n<li>Indo-French Centre for the Promotion of Advanced Research (IFCPAR): Grant n\u00b0 3903-1 to N. Srinivasan and A.G. de Brevern<\/li>\n<li>Peaccel (France) for webhosting<\/li>\n<\/ul>\n<p><!--\n\n\n<tr>\n\n\n<td align=\"center\"><a href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo_univ_reunion.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-261\" title=\"logo_univ_reunion\" src=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo_univ_reunion.jpg\" alt=\"\" width=\"75\" height=\"68\" \/><\/a><\/td>\n\n\n\n\n<td align=\"center\"><a href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo_ints.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-262\" title=\"logo_ints\" src=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo_ints.jpg\" alt=\"\" width=\"65\" height=\"47\" \/><\/a><\/td>\n\n\n\n\n<td align=\"center\"><a href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo-cnrs.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-thumbnail wp-image-264\" title=\"logo-cnrs\" src=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo-cnrs-150x150.jpg\" alt=\"\" width=\"75\" height=\"75\" \/><\/a><\/td>\n\n\n\n\n<td align=\"center\"><a href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo_univ_nantes.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-260\" title=\"logo_univ_nantes\" src=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo_univ_nantes-300x166.jpg\" alt=\"\" width=\"150\" height=\"83\" \/><\/a><\/td>\n\n\n\n\n<td align=\"center\"><a href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logoInserm.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-266\" title=\"logoInserm\" src=\"https:\/\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logoInserm-300x113.jpg\" alt=\"\" width=\"150\" height=\"56\" \/><\/a><\/td>\n\n\n<\/tr>\n\n\n--><\/p>\n<table align=\"center\">\n<tbody>\n<tr>\n<td align=\"center\"><a href=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/LOGO-REGION-REUNION.jpg?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" class=\"alignnone size-thumbnail wp-image-268\" title=\"Logo Region Reunion\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/LOGO-REGION-REUNION-150x150.jpg?resize=75%2C75&#038;ssl=1\" alt=\"\" width=\"75\" height=\"75\" \/><\/a><\/td>\n<td align=\"center\"><a href=\"http:\/\/www.paysdelaloire.fr\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" class=\"alignnone size-thumbnail wp-image-268\" title=\"Logo Region Pays de Loire\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2015\/04\/logo-region-pdl.jpg?resize=175%2C50&#038;ssl=1\" alt=\"\" width=\"175\" height=\"50\" \/><\/a><\/td>\n<td align=\"center\"><a href=\"http:\/\/griote.univ-nantes.fr\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" class=\"alignnone size-thumbnail wp-image-268\" title=\"Logo Region Pays de Loire\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2015\/04\/logo_projet_griote.png?resize=75%2C75&#038;ssl=1\" alt=\"\" width=\"75\" height=\"75\" \/><\/a><\/td>\n<td align=\"center\"><a href=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo-cefipra.jpeg?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-263\" title=\"logo cefipra\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/04\/logo-cefipra.jpeg?resize=140%2C44&#038;ssl=1\" alt=\"\" width=\"140\" height=\"44\" \/><\/a><\/td>\n<td align=\"center\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" class=\"alignnone\" title=\"Peaccel Inc.\" src=\"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2015\/04\/logo_peaccel.001-001.jpg?resize=195%2C53&#038;ssl=1\" alt=\"Peaccel logo\" width=\"195\" height=\"53\" \/><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>Last updated onTuesday, May 2, 2023Team PB-PENTAPEPT was developed and is maintained by an international team lead by Bernard Offmann (University of Nantes). Active members Nantes Universit\u00e9 (US2B, Nantes, France): Lionel Hoffmann, Yves-Henri Sanejouand, Bernard Offmann, Timoth\u00e9e Salzat-Hervouette INSERM and &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"more-link\" href=\"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/?page_id=11\"> <span class=\"screen-reader-text\">Acknowledgements<\/span> Read More &raquo;<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"full-width-page.php","meta":{"footnotes":""},"class_list":["post-11","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/P7vx5Y-b","jetpack-related-posts":[{"id":9,"url":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/?page_id=9","url_meta":{"origin":11,"position":0},"title":"Methodology","author":"adminufip","date":"February 16, 2016","format":false,"excerpt":"Step 1: interrogating PB-PENTAdb database The program will use a sliding window of 5 residues (pentapeptide) to parse every query protein sequences. For each pentapeptide, it will interrogate PB-PENTAdb for its presence and get a list of all local structures (protein blocks) the pentapeptide is associated with. In absence of\u2026","rel":"","context":"Similar post","block_context":{"text":"Similar post","link":""},"img":{"alt_text":"figure02b_kpred_database_query_and_hits","src":"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/figure02b_kpred_database_query_and_hits-1024x768.jpg?resize=350%2C200&ssl=1","width":350,"height":200,"srcset":"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/figure02b_kpred_database_query_and_hits-1024x768.jpg?resize=350%2C200&ssl=1 1x, https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/figure02b_kpred_database_query_and_hits-1024x768.jpg?resize=525%2C300&ssl=1 1.5x"},"classes":[]},{"id":7,"url":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/?page_id=7","url_meta":{"origin":11,"position":1},"title":"Help","author":"adminufip","date":"February 16, 2016","format":false,"excerpt":"Knowledge-based prediction of local structures using protein blocks PB-kPRED is a server for knowledge-based prediction of local backbone structures in terms of protein blocks (PBs). It is built upon the PB-PENTAdb database. Input Provide in the textbox one or more protein sequences in fasta format as shown below. Choice of\u2026","rel":"","context":"Similar post","block_context":{"text":"Similar post","link":""},"img":{"alt_text":"Screen Shot 2015-04-24 at 23.45.06","src":"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/Screen-Shot-2015-04-24-at-23.45.06.png?resize=350%2C200&ssl=1","width":350,"height":200,"srcset":"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/Screen-Shot-2015-04-24-at-23.45.06.png?resize=350%2C200&ssl=1 1x, https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/pentapept\/wp-content\/uploads\/2012\/02\/Screen-Shot-2015-04-24-at-23.45.06.png?resize=525%2C300&ssl=1 1.5x"},"classes":[]},{"id":26,"url":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/","url_meta":{"origin":11,"position":2},"title":"PB-kpred","author":"adminufip","date":"April 1, 2016","format":false,"excerpt":"Knowledge-based prediction of local structures using protein blocks We have shown that protein 3D structure information can be abstracted advantageously into a simplified 1D representation in terms of a protein blocks sequence (PB-assignment). Indeed, it was shown previously by us (Tyagi et al, 2006, Tyagi et al, 2008) that the\u2026","rel":"","context":"Similar post","block_context":{"text":"Similar post","link":""},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/pbpred-us2b.univ-nantes.fr\/kpred\/wp-content\/uploads\/2023\/04\/0C311915-43BC-4DB3-B376-03C3234889EB-300x225.jpeg?resize=350%2C200&ssl=1","width":350,"height":200},"classes":[]}],"_links":{"self":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=\/wp\/v2\/pages\/11","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=11"}],"version-history":[{"count":10,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=\/wp\/v2\/pages\/11\/revisions"}],"predecessor-version":[{"id":140,"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=\/wp\/v2\/pages\/11\/revisions\/140"}],"wp:attachment":[{"href":"https:\/\/pbpred-us2b.univ-nantes.fr\/kpred\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=11"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}